Pedobacter ruber strain DSM 24536

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Daejeonella

Description

Pedobacter ruber strain DSM 24536 is a Gram-negative, non-spore-forming rod that thrives in aerobic conditions, with an optimal growth temperature of 16.0 °C. This organism belongs to the genus Pedobacter, which is recognized for its diverse metabolic capabilities and adaptability to various environments, particularly in cooler temperatures. As a member of the family Sphingobacteriaceae, Pedobacter ruber exhibits traits typical of its relatives, including a preference for nutrient-rich environments. The absence of sporulation suggests that this strain may rely on other survival strategies in adverse conditions, possibly including metabolic versatility or the formation of resilient biofilms. The specific growth temperature of 16.0 °C indicates that Pedobacter ruber may be particularly suited for life in colder habitats, such as soil or aquatic environments, where temperatures are typically lower. This trait may confer ecological advantages in nutrient cycling and decomposition processes in such ecosystems. Overall, the characteristics of Pedobacter ruber strain DSM 24536 underscore its potential role in biogeochemical cycles, particularly in arctic or subarctic environments, where microbial activity is crucial for the breakdown of organic matter and nutrient availability during colder months. Further studies may reveal additional insights into its ecological functions and contributions to microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusDaejeonella
SpeciesDaejeonella rubra
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter ruber strain DSM 24536


Gene Summary

Adenine Count

1308496 bp

Thymine Count

1307397 bp

Guanine Count

834775 bp

Cytosine Count

828617 bp

Genome Length

4279285 bp

Protein-coding Genes

3702 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
integrase core domain-containing proteinSAMN05421813_1011Not Available+1 - 51819724.7
5s ribosomal rna . bacterial tsuNot AvailableNot Available+8 - 11918.01
23s ribosomal rna . bacterial lsuNot AvailableNot Available+303 - 318518.01
hypothetical proteinSAMN05421813_1012Not Available-1029 - 11905514.68
hypothetical proteinSAMN05421813_1013Not Available-1270 - 14676942.05
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN05421813_1014Not Available+1875 - 244122272.4
pimeloyl-acp methyl ester carboxylesteraseSAMN05421813_1015Not Available+2486 - 339434792.0
hypothetical proteinSAMN05421813_1016Not Available-3484 - 37359478.73
16s ribosomal rna . bacterial ssuNot AvailableNot Available+4032 - 555718.01
dihydrofolate reductaseSAMN05421813_1017Not Available-3841 - 441321234.5

Displaying genes 1 – 10 of 3744 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites