Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Cytophagaceae
Genus
Siphonobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Cytophagaceae |
| Genus | Siphonobacter |
| Species | Siphonobacter aquaeclarae |
| Strain | strain DSM 21668 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | facultative aerobe/anaerobe |
| Optimal temperature | 32 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1418575 bp
Thymine Count
1407705 bp
Guanine Count
1683608 bp
Cytosine Count
1675647 bp
Genome Length
6189941 bp
Protein-coding Genes
4967 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna . bacterial ssu | Not Available | Not Available | + | 506 - 2014 | 18.01 |
| hypothetical protein | SAMN04488090_0001 | Not Available | - | 1 - 854 | 30986.2 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN04488090_0002 | Not Available | + | 1136 - 2092 | 37328.9 |
| 23s ribosomal rna . bacterial lsu | Not Available | Not Available | + | 2532 - 5350 | 18.01 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN04488090_0003 | Not Available | - | 2126 - 2728 | 22765.5 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN04488090_0004 | Not Available | - | 2788 - 3180 | 14199.8 |
| hypothetical protein | SAMN04488090_0005 | Not Available | + | 3510 - 4016 | 18502.7 |
| hypothetical protein | SAMN04488090_0006 | Not Available | + | 4024 - 5565 | 59259.3 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 5477 - 5588 | 18.01 |
| polygalacturonase | SAMN04488090_0007 | Not Available | + | 5510 - 7102 | 58020.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
