Siphonobacter aquaeclarae strain DSM 21668

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Siphonobacter

Description

Siphonobacter aquaeclarae strain DSM 21668 is a Gram-negative, rod-shaped bacterium that exhibits facultative aerobic and anaerobic metabolism. This organism thrives optimally at a temperature of 32.0 °C, indicating a preference for moderate thermal conditions often found in aquatic environments. The Gram-negative characteristic suggests that the bacterium possesses a thin peptidoglycan layer surrounded by an outer membrane, which may play a role in its adaptability to varying oxygen levels. The facultative nature of S. aquaeclarae strain DSM 21668 allows it to utilize both aerobic and anaerobic respiration, enabling it to survive in diverse ecological niches, particularly in environments where oxygen availability fluctuates. This metabolic versatility could provide a competitive advantage in natural habitats, potentially allowing it to exploit organic substrates under different redox conditions. Moreover, the ability to thrive at an optimal temperature of 32.0 °C suggests that S. aquaeclarae is well-suited to environments that are warm but not extreme, potentially aligning it with freshwater ecosystems. Understanding the physiological traits of S. aquaeclarae may contribute to insights into its ecological role within microbial communities, particularly in the degradation of organic matter under varying oxygen conditions. This adaptability could have implications for biogeochemical cycles in freshwater habitats, highlighting the significance of such microorganisms in nutrient cycling and ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSiphonobacter
SpeciesSiphonobacter aquaeclarae
Strainstrain DSM 21668

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature32
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Siphonobacter aquaeclarae strain DSM 21668


Gene Summary

Adenine Count

1418575 bp

Thymine Count

1407705 bp

Guanine Count

1683608 bp

Cytosine Count

1675647 bp

Genome Length

6189941 bp

Protein-coding Genes

4967 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
alpha-l-fucosidase 2SAMN04488090_0008Not Available+7099 - 9894103923.0
arac-type dna-binding proteinSAMN04488090_0009Not Available-9898 - 1077634026.0
protein of unknown functionSAMN04488090_0010Not Available+11086 - 1171823641.2
tonb-linked outer membrane protein, susc/raga familySAMN04488090_0011Not Available+11760 - 14999118069.0
starch-binding associating with outer membraneSAMN04488090_0012Not Available+15016 - 1679465148.5
hypothetical proteinSAMN04488090_0013Not Available-16864 - 1826753312.9
alpha-l-fucosidaseSAMN04488090_0014Not Available+18475 - 1972246196.8
transcriptional regulator, hxlr familySAMN04488090_0015Not Available-19751 - 2006511590.2
predicted dithiol-disulfide isomerase, dsba familySAMN04488090_0016Not Available+20320 - 2123734421.1
adenylosuccinate synthetaseSAMN04488090_0017Not Available-21333 - 2260746397.5

Displaying genes 11 – 20 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites