Ferrimonas sediminum strain DSM 23317

rodfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Ferrimonadaceae

Genus

Ferrimonas

Description

Ferrimonas sediminum strain DSM 23317 is a Gram-negative, rod-shaped bacterium that exhibits facultative anaerobic metabolism and thrives optimally at a temperature of 25.0°C. This organism's Gram-negative classification is indicative of its distinctive cell wall structure, which comprises an outer membrane containing lipopolysaccharides, a characteristic feature of many environmental and clinical bacteria. As a facultative aerobe, Ferrimonas sediminum has the metabolic versatility to utilize oxygen when available, while also possessing the ability to survive in anaerobic conditions. This adaptability to varying oxygen levels suggests that the strain may play a role in diverse environments, potentially contributing to biogeochemical cycles, particularly in sedimentary habitats where oxygen gradients are common. The optimal growth temperature of 25.0°C aligns with temperate environmental contexts, which may influence its ecological interactions and metabolic processes. The ability of this bacterium to thrive in such conditions highlights its potential significance in microbial communities, particularly in sediment-rich ecosystems where it may engage in nutrient cycling or interact with other microbial species. Overall, Ferrimonas sediminum strain DSM 23317 exemplifies the ecological versatility of microbial life, showcasing the importance of environmental factors in shaping microbial physiology and community dynamics. Its presence in sedimentary environments could provide insights into the roles of bacteria in maintaining ecosystem health and stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyFerrimonadaceae
GenusFerrimonas
SpeciesFerrimonas sediminum
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ferrimonas sediminum strain DSM 23317

Accession NumberFNEM00000000.1

Gene Summary

Adenine Count

936234 bp

Thymine Count

928564 bp

Guanine Count

1248066 bp

Cytosine Count

1257980 bp

Genome Length

4375383 bp

Protein-coding Genes

3941 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
menaquinone-dependent protoporphyrinogen oxidaseSAMN04488540_12240Not Available+4009542 - 401006619939.1
dna-binding transcriptional regulator, arsr familySAMN04488540_12241Not Available-4010102 - 401041611536.0
menaquinone-dependent protoporphyrinogen oxidaseSAMN04488540_12242Not Available+4010599 - 401113820495.7
trk system potassium uptake protein trkhSAMN04488540_12243Not Available-4011204 - 401264652542.0
trk system potassium uptake protein trkaSAMN04488540_12244Not Available-4012661 - 401406151338.5
16s rrna m(5)c-967 methyltransferaseSAMN04488540_12245Not Available-4014068 - 401537248794.6
methionyl-trna formyltransferaseSAMN04488540_12246Not Available-4015369 - 401631334137.9
peptide deformylaseSAMN04488540_12247Not Available-4016323 - 401683519437.2
lysm domain-containing proteinSAMN04488540_12248Not Available+4016970 - 401795636222.9
dna protecting protein dpraSAMN04488540_12249Not Available+4017937 - 401901338371.9

Displaying genes 3661 – 3670 of 4013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites