Campylobacter geochelonis strain RC20

rod

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter geochelonis strain RC20 is a Gram-negative rod-shaped bacterium that exhibits characteristics typical of the Campylobacter genus. This strain is part of a diverse group of bacteria known for their association with various environmental and host-associated niches. The Gram-negative nature of C. geochelonis strain RC20 suggests a complex cell wall structure, which is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides. This structural feature may contribute to the organism's resilience in specific environments. The rod shape of C. geochelonis strain RC20 is significant as it may influence motility and colonization abilities, potentially allowing it to thrive in various habitats. While the specific ecological roles of this strain remain to be fully elucidated, its classification within the Campylobacter genus indicates a potential for adaptation to microaerophilic conditions, which are often found in various ecological niches, including animal intestines and soil. Understanding the traits of C. geochelonis strain RC20 could provide insights into its ecological interactions and potential contributions to microbial community dynamics. Further research on this strain may reveal its role in nutrient cycling or its interactions with other microbes in its environment, contributing to our knowledge of microbial diversity and functionality in ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter geochelonis
Strainstrain RC20

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter geochelonis strain RC20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter geochelonis strain RC20


Gene Summary

Adenine Count

693989 bp

Thymine Count

697666 bp

Guanine Count

358509 bp

Cytosine Count

344818 bp

Genome Length

2098701 bp

Protein-coding Genes

1901 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+131 - 247Not Available
23s ribosomal rnaNot AvailableNot Available+522 - 3432Not Available
pp_00001ERS672216_00001Not Available-610 - 1533Not Available
fdhc proteinERS672216_00002Not Available-1533 - 253138303.7
dnak suppressor proteinERS672216_00003Not Available-2543 - 289613373.0
ribosomal rna large subunit methyltransferase hERS672216_00004A7ZC60-2906 - 335817112.8
acetyl-coa carboxylase subunit betaERS672216_00005Q7MAM0-3361 - 426933386.2
putative recombination protein recoERS672216_00006Not Available+4422 - 503624311.3
16s ribosomal rnaNot AvailableNot Available+4871 - 6374Not Available
exporter proteinERS672216_00007Not Available-5033 - 535011026.8

Displaying genes 1 – 10 of 1945 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

111 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 111 metabolites