Yersinia frederiksenii

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Yersiniaceae

Genus

Yersinia

Description

Yersinia frederiksenii is a Gram-negative bacterium that has been identified in various environmental contexts and food sources. As a member of the Yersinia genus, it is closely related to other species within this group, although its specific ecological roles and behaviors are less well characterized. This microbe is notable for its presence in diverse habitats, suggesting a degree of adaptability that may allow it to thrive under varying environmental conditions. The characterization of Yersinia frederiksenii as a Gram-negative organism indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which is a hallmark of this bacterial group. The outer membrane often confers certain advantages such as resistance to some antibiotics and detergents, enhancing the organism's survival in different environments, including those associated with food. Given its habitat, Yersinia frederiksenii might play a role in the microbial communities present in food processing environments or natural ecosystems, potentially influencing food safety and quality. Future studies could elucidate its interactions within these communities and the potential implications of its presence in food systems, particularly in relation to spoilage or the modulation of other microbial populations. This highlights the importance of understanding the ecological dynamics of Yersinia frederiksenii as part of broader microbiological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia frederiksenii
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Yersinia frederiksenii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatenvironment; food
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Yersinia frederiksenii


Gene Summary

Adenine Count

1333504 bp

Thymine Count

1344869 bp

Guanine Count

1236546 bp

Cytosine Count

1202346 bp

Genome Length

5118009 bp

Protein-coding Genes

4452 genes

Non-Coding Genes

262 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Dini-like family proteinERS008521_00117P0A1G4-151311 - 1515539148.92
Prophage repressorERS008521_00118P03034-151822 - 15254426229.4
Antitermination protein qERS008521_00119Q9T1U3+152818 - 15329717862.8
Hypothetical proteinERS008521_00120Not Available+153563 - 15384110648.9
LysozymeERS008521_00121O80292+153843 - 15435818598.5
putative phage antitermination protein qERS008521_00122Not Available+154355 - 15468412219.7
putative atp-binding proteinERS008521_00123Not Available+155014 - 15554419520.2
putative bacteriophage proteinERS008521_00124Not Available+155549 - 1557437131.56
Tail sheath proteinERS008521_00125Not Available+155740 - 15724853163.2
phage tail tube proteinERS008521_00126Not Available+157297 - 15766512819.0

Displaying genes 1 – 10 of 9075 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

584 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 584 metabolites