Hyphomicrobium sp. GJ21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium sp. GJ21
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomicrobium sp. GJ21

Accession NumberCDHO00000000.1

Gene Summary

Adenine Count

757231 bp

Thymine Count

750643 bp

Guanine Count

1157090 bp

Cytosine Count

1177869 bp

Genome Length

3842833 bp

Protein-coding Genes

4006 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Baseplate hub subunit and tail lysozymeHYPGJ_21150Not Available-1743607 - 174492046917.9
Tail proteinHYPGJ_21151Not Available-1745308 - 1749255140915.0
Gta-like proteinHYPGJ_21152Not Available-1749259 - 174970816252.4
Minor tail proteinHYPGJ_21153Not Available-1749712 - 175057230553.0
Tail proteinHYPGJ_21154Not Available-1750569 - 175120723154.3
Tail tape measure proteinHYPGJ_21155Not Available-1751220 - 175181319969.0
conserved hypothetical proteinHYPGJ_21156Not Available-1751818 - 17519916204.57
conserved hypothetical proteinHYPGJ_21157Not Available-1751991 - 175237112793.1
Gene transfer aget (gta) orfg9-like phage major tail proteinHYPGJ_21158Not Available-1752532 - 175294514388.9
Tail proteinHYPGJ_21159Not Available-1753166 - 175357915129.5

Displaying genes 1 – 10 of 1404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

107 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0009261(3R)-3-hydroxypentanoyl-CoAC26H40N7O18P3SChemical structure of (3R)-3-hydroxypentanoyl-CoANot available
Average863.62Da
Monoisotopic863.138533964Da
BASm0009262(3R)-3-hydroxypentanoateC5H9O3Chemical structure of (3R)-3-hydroxypentanoateNot available
Average117.125Da
Monoisotopic117.0557177Da
BASm0009272(3S)-3-hydroxypentanoyl-CoAC26H40N7O18P3SChemical structure of (3S)-3-hydroxypentanoyl-CoANot available
Average863.62Da
Monoisotopic863.138534Da
BASm0009273(3S)-3-hydroxypentanoateC5H9O3Chemical structure of (3S)-3-hydroxypentanoateNot available
Average117.125Da
Monoisotopic117.05571773Da
BASm0009318(3R)-3-hydroxy-4-oxobutanoateC4H5O4Chemical structure of (3R)-3-hydroxy-4-oxobutanoateNot available
Average117.081Da
Monoisotopic117.019332221Da
BASm00106538-oxo-GMPC10H12N5O9PChemical structure of 8-oxo-GMPNot available
Average377.207Da
Monoisotopic377.038361144Da
BASm0010825N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideC8H13N2O9PChemical structure of N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamideNot available
Average312.172Da
Monoisotopic312.0369642Da
BASm00108262-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidineC8H15N3O8PChemical structure of 2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidineNot available
Average312.195Da
Monoisotopic312.060225Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da
BASm0010887(4R,5S)-dethiobiotinC10H18N2O3Chemical structure of (4R,5S)-dethiobiotin533-48-2
Average214.2615Da
Monoisotopic214.1317425Da

Displaying 91–100 of 107 metabolites