Sphingomonas changbaiensis NBRC 104936

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas changbaiensis NBRC 104936 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This organism is part of the diverse Sphingomonad family, which is characterized by its unique lipid composition, particularly the presence of sphingolipids in its membrane structure. The adaptability of Sphingomonas changbaiensis to aerobic environments suggests its potential role in biogeochemical cycles, particularly in the degradation of complex organic compounds in its native habitat. While specific ecological niches of this strain have not been detailed, members of the Sphingomonas genus are often found in soil and aquatic environments, where they contribute to the breakdown of pollutants. This metabolic versatility may provide insights into its possible applications in bioremediation processes, especially in environments contaminated with recalcitrant organic materials. Understanding the physiological traits of Sphingomonas changbaiensis can inform further research into its ecological roles and potential uses in environmental microbiology. Its optimal growth temperature indicates a preference for moderate environments, which may reflect its adaptation to specific ecological contexts, thus highlighting the importance of studying this bacterium's interactions within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas changbaiensis
StrainNBRC 104936

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas changbaiensis NBRC 104936
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas changbaiensis NBRC 104936


Gene Summary

Adenine Count

543206 bp

Thymine Count

541502 bp

Guanine Count

1062619 bp

Cytosine Count

1070048 bp

Genome Length

3217375 bp

Protein-coding Genes

3152 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSCH01S_01_00010Not AvailablePositive209 - 73918594.4
hypothetical proteinSCH01S_01_00020Not AvailableNegative1078 - 147313465.4
hypothetical proteinSCH01S_01_00030Not AvailableNegative1569 - 217120165.3
hypothetical proteinSCH01S_01_00040Not AvailablePositive2301 - 270514058.9
hypothetical proteinSCH01S_01_00050Not AvailablePositive2842 - 30246742.87
hypothetical proteinSCH01S_01_00060Not AvailableNegative3130 - 350413904.5
hypothetical proteinSCH01S_01_00070A5DEZ6Negative3579 - 424723142.4
putative transcription elongation factorSCH01S_01_00080Not AvailableNegative4244 - 470216238.2
hypothetical proteinSCH01S_01_00090Not AvailableNegative4877 - 50536453.64
hypothetical proteinSCH01S_01_00100Not AvailableNegative5585 - 608818550.0

Displaying genes 1 – 10 of 3201 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

264 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da

Displaying 1–10 of 264 metabolites

Health Effects

No health effects information available for this bacterium.