Gardnerella vaginalis JCP8151B

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Gardnerella

Description

Gardnerella vaginalis JCP8151B is a Gram-positive, rod-shaped bacterium that exhibits anaerobic metabolism and thrives optimally at a temperature of 37.0°C. This microbe is classified as a nonsporulating, chemoheterotrophic organism, indicating that it derives its energy from organic compounds and does not form spores under natural conditions. G. vaginalis is primarily found in host-associated environments, suggesting a close association with the human microbiome, particularly in the vaginal microbiota. The presence of this organism in such specific habitats may play a role in maintaining the delicate balance of microbial communities, although the implications of its metabolic activities in this context require further investigation. Notably, the anaerobic nature of G. vaginalis suggests that it may compete with other microbial species for resources in low-oxygen environments, potentially influencing community dynamics within the host. This competitive interaction could have significant ramifications for microbial diversity and stability in the vaginal ecosystem, highlighting the necessity for further research into its ecological role and the factors that govern its presence and abundance in host-associated environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusGardnerella
SpeciesGardnerella vaginalis
StrainJCP8151B

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Gardnerella vaginalis JCP8151B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Gardnerella vaginalis JCP8151B


Gene Summary

Adenine Count

445745 bp

Thymine Count

450545 bp

Guanine Count

335843 bp

Cytosine Count

319104 bp

Genome Length

1551237 bp

Protein-coding Genes

1450 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Portal proteinHMPREF1583_00875Not Available+920039 - 92153254854.8
Putative capsid maturation proteaseHMPREF1583_00876Not Available+921615 - 92260136821.9
hypothetical proteinHMPREF1583_00877Not Available+922713 - 9229619312.07
hypothetical proteinHMPREF1583_00878Not Available+923052 - 92351317368.1
Major capsid proteinHMPREF1583_00879Not Available+923545 - 92445932459.6
Head-to-tail connector complex proteinHMPREF1583_00880Not Available+924475 - 92486113754.2
hypothetical proteinHMPREF1583_00881Not Available+924851 - 92520112596.8
hypothetical proteinHMPREF1583_00882Not Available+925203 - 92549910419.6
hypothetical proteinHMPREF1583_00883Not Available+925500 - 92586513233.7
Tail assembly chaperoneHMPREF1583_00884Not Available+925877 - 92647021221.6

Displaying genes 1 – 10 of 1506 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0003686(2E,6E,10E)-geranylgeranyl diphosphateC20H33O7P2Chemical structure of (2E,6E,10E)-geranylgeranyl diphosphateNot available
Average447.426Da
Monoisotopic447.171798138Da
BASm0003701L-methionine (S)-S-oxideC5H11NO3SChemical structure of L-methionine (S)-S-oxide62697-73-8
Average165.21Da
Monoisotopic165.045964392Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0004394zeaxanthin bis(beta-D-glucoside)C52H76O12Chemical structure of zeaxanthin bis(beta-D-glucoside)Not available
Average893.168Da
Monoisotopic892.5336779Da
BASm00068103-(methylsulfanyl)propanoyl-CoAC25H38N7O17P3S2Chemical structure of 3-(methylsulfanyl)propanoyl-CoANot available
Average865.65Da
Monoisotopic865.1000405Da
BASm00072473-(methylsulfanyl)acryloyl-CoAC25H36N7O17P3S2Chemical structure of 3-(methylsulfanyl)acryloyl-CoANot available
Average863.64Da
Monoisotopic863.0843904Da
BASm0008659propionate 3-nitronateC3H4NO4Chemical structure of propionate 3-nitronateNot available
Average118.069Da
Monoisotopic118.0145812Da
BASm0010884(7R,8S)-7,8-diammoniononanoateC9H21N2O2Chemical structure of (7R,8S)-7,8-diammoniononanoateNot available
Average189.278Da
Monoisotopic189.1597543Da

Displaying 1–10 of 11 metabolites