Cedecea davisae DSM 4568

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Cedecea

Description

Cedecea davisae DSM 4568 is a Gram-negative bacterium that exhibits strict aerobic respiration. This organism belongs to the family Enterobacteriaceae and is characterized by its ability to thrive in oxygen-rich environments, which is a notable trait among many members of this family that can also exhibit facultative anaerobic metabolism. The Gram-negative nature of Cedecea davisae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane, which includes lipopolysaccharides that can influence interactions with surrounding environments and other microorganisms. As an aerobic bacterium, Cedecea davisae is reliant on oxygen for its metabolic processes, which may confer certain advantages in competitive environments where oxygen availability is high. The organism’s aerobic metabolism suggests that it may play a role in processes such as nutrient cycling in its native habitat, although specific ecological roles remain to be fully elucidated. Cedecea davisae DSM 4568 may be particularly significant in microbial communities where oxygen gradients are present, as its aerobic lifestyle could allow it to outcompete anaerobic organisms for resources in oxygen-rich niches. This trait might also indicate its potential utility in biotechnological applications where oxygen is a critical factor, such as in wastewater treatment or bioremediation processes. Understanding the ecological role and metabolic capabilities of Cedecea davisae can provide insights into the dynamics of microbial communities in oxygenated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCedecea
SpeciesCedecea davisae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cedecea davisae DSM 4568

Accession NumberATDT00000000.1

Gene Summary

Adenine Count

1110131 bp

Thymine Count

1106000 bp

Guanine Count

1317108 bp

Cytosine Count

1320642 bp

Genome Length

4853881 bp

Protein-coding Genes

4744 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
outer membrane lipoprotein blcHMPREF0201_00189Not Available-178498 - 17903119711.6
beta-lactamaseHMPREF0201_00190Not Available-179139 - 18028741887.6
hth-type transcriptional activator amprHMPREF0201_00191Not Available+180419 - 18129432224.6
fumarate reductase hydrophobic proteinHMPREF0201_00192Not Available-181336 - 18169513202.8
fumarate reductase subunit cHMPREF0201_00193Not Available-181706 - 18206813532.0
fumarate reductase iron-sulfur subunitHMPREF0201_00194Not Available-182112 - 18284627168.7
Ncrna_class:otherNot AvailableNot Available+184241 - 184424Not Available
fumarate reductase, flavoprotein subunitHMPREF0201_00195Not Available-182839 - 18465966841.6
lysine--trna ligase-like protein genxHMPREF0201_00196Not Available+184968 - 18599038457.9
acetyltransferase, gnat familyHMPREF0201_00197Not Available+186059 - 18658920700.6

Displaying genes 281 – 290 of 4905 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

546 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 546 metabolites