Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola massiliensis, also known by its strain identifiers B84634, Timone 84634, DSM 17679, and JCM, is a Gram-negative bacterium primarily found in the gut. This microbe is characterized by its rod-shaped morphology and is part of the diverse microbial communities that inhabit the gastrointestinal tract of various hosts. As a member of the gut microbiota, P. massiliensis may play a role in the digestion of complex carbohydrates and the maintenance of gut health, contributing to the overall homeostasis of the intestinal environment. While the specific metabolic pathways and interactions of this species within the gut microbiome remain to be fully elucidated, its presence suggests a potential involvement in nutrient absorption and fermentation processes. Given the complex interactions within gut microbiota, P. massiliensis may also serve as an indicator of microbial diversity and gut ecosystem stability. Further research into this organism could provide insights into its functional contributions and the implications of its presence in the gastrointestinal tract of different hosts. Understanding the role of P. massiliensis within the gut could enhance our knowledge of microbial ecology and its impact on host health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola massiliensis
StrainB84634 = Timone 84634 = DSM 17679 = JCM

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola massiliensis B84634 = Timone 84634 = DSM 17679 = JCM


Gene Summary

Adenine Count

1304608 bp

Thymine Count

1311189 bp

Guanine Count

968725 bp

Cytosine Count

980062 bp

Genome Length

4564584 bp

Protein-coding Genes

3935 genes

Non-Coding Genes

77 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5'-nucleotidase sureHMPREF1534_00067Not Available+78755 - 7953428531.2
lipid-a-disaccharide synthaseHMPREF1534_00068Not Available+79531 - 8067043130.7
hypothetical proteinHMPREF1534_00069Not Available-80870 - 8170930912.4
atp-dependent metallopeptidase hflbHMPREF1534_00070Not Available-81800 - 8379474046.5
iojap-like ribosome-associated proteinHMPREF1534_00071Not Available-83813 - 8417213440.0
hypothetical proteinHMPREF1534_00072Not Available+84372 - 845818046.94
Trna-glnNot AvailableNot Available+84689 - 84762Not Available
hypothetical proteinHMPREF1534_00074Not Available+85083 - 8644152811.7
hypothetical proteinHMPREF1534_00075Not Available-86698 - 8850670821.1
magnesium transporterHMPREF1534_00076Not Available-88716 - 9005649529.6

Displaying genes 71 – 80 of 4012 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

496 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da

Displaying 1–10 of 496 metabolites