Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucosamine-6-phosphate deaminase | HMPREF1534_00456 | Not Available | Negative | 568328 - 569119 | 29060.7 |
| hypothetical protein | HMPREF1534_00457 | Not Available | Positive | 569665 - 570873 | 44769.5 |
| had hydrolase, family ia | HMPREF1534_00458 | Not Available | Negative | 571070 - 571804 | 27369.9 |
| glucose-6-phosphate isomerase | HMPREF1534_00459 | Not Available | Negative | 571907 - 573253 | 49325.1 |
| hypothetical protein | HMPREF1534_00460 | Not Available | Negative | 573266 - 574261 | 37124.2 |
| lysyl-trna synthetase | HMPREF1534_00461 | Not Available | Negative | 574272 - 576002 | 66078.8 |
| hypothetical protein | HMPREF1534_00462 | Not Available | Negative | 576077 - 576817 | 28188.3 |
| hypothetical protein | HMPREF1534_00463 | Not Available | Positive | 576912 - 577460 | 20481.3 |
| hypothetical protein | HMPREF1534_00464 | Not Available | Positive | 577467 - 578276 | 30721.2 |
| hypothetical protein | HMPREF1534_00465 | Not Available | Positive | 578411 - 578908 | 18648.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


