Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00446 | Not Available | Negative | 548785 - 550704 | 71735.4 |
| hypothetical protein | HMPREF1534_00447 | Not Available | Negative | 550728 - 553538 | 105284.0 |
| hypothetical protein | HMPREF1534_00448 | Not Available | Negative | 553846 - 555522 | 64833.1 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_00449 | Not Available | Negative | 555544 - 558942 | 127650.0 |
| hypothetical protein | HMPREF1534_00450 | Not Available | Negative | 559125 - 560090 | 37073.2 |
| rna polymerase sigma-70 factor | HMPREF1534_00451 | Not Available | Negative | 560156 - 560704 | 21716.1 |
| tigr02757 family protein | HMPREF1534_00452 | Not Available | Positive | 561059 - 561829 | 29527.5 |
| hypothetical protein | HMPREF1534_00453 | Not Available | Negative | 561858 - 564635 | 104975.0 |
| hypothetical protein | HMPREF1534_00454 | Not Available | Negative | 564702 - 566195 | 56021.3 |
| glucosamine-6-phosphate deaminase | HMPREF1534_00455 | Not Available | Negative | 566336 - 568324 | 74606.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


