Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_00426 | Not Available | Positive | 515901 - 519158 | 120857.0 |
| hypothetical protein | HMPREF1534_00427 | Not Available | Positive | 519189 - 520703 | 57534.5 |
| sialidase | HMPREF1534_00428 | Not Available | Positive | 520831 - 522471 | 60365.3 |
| hypothetical protein | HMPREF1534_00429 | Not Available | Positive | 522502 - 524481 | 75881.2 |
| hypothetical protein | HMPREF1534_00430 | Not Available | Positive | 524483 - 525148 | 25071.7 |
| hypothetical protein | HMPREF1534_00431 | Not Available | Positive | 525145 - 527214 | 78033.8 |
| hypothetical protein | HMPREF1534_00432 | Not Available | Positive | 527267 - 529867 | 100268.0 |
| hypothetical protein | HMPREF1534_00433 | Not Available | Positive | 529883 - 532207 | 86366.6 |
| cyclically-permuted mutarotase | HMPREF1534_00434 | Not Available | Positive | 532224 - 533363 | 40290.1 |
| hypothetical protein | HMPREF1534_00435 | Not Available | Positive | 533360 - 535420 | 77243.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


