Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanyl-trna synthetase alpha chain | HMPREF1534_00396 | Not Available | Negative | 483158 - 484192 | 38921.5 |
| hypothetical protein | HMPREF1534_00397 | Not Available | Positive | 484304 - 485164 | 33371.5 |
| udp-n-acetylenolpyruvoylglucosamine reductase | HMPREF1534_00398 | Not Available | Positive | 485180 - 486193 | 37546.8 |
| hypothetical protein | HMPREF1534_00399 | Not Available | Positive | 486201 - 486980 | 29391.7 |
| endonuclease iii | HMPREF1534_00400 | Not Available | Negative | 486977 - 487621 | 24251.8 |
| hypothetical protein | HMPREF1534_00401 | Not Available | Positive | 487787 - 488473 | 25176.8 |
| 7-cyano-7-deazaguanine synthase | HMPREF1534_00402 | Not Available | Positive | 488477 - 489133 | 24107.8 |
| nadph-dependent 7-cyano-7-deazaguanine reductase | HMPREF1534_00403 | Not Available | Positive | 489163 - 489618 | 17805.4 |
| dna polymerase iii, subunit gamma and tau | HMPREF1534_00404 | Not Available | Negative | 489690 - 491522 | 68150.7 |
| hypothetical protein | HMPREF1534_00405 | Not Available | Positive | 491642 - 491938 | 11878.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


