Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rpib/laca/lacb family sugar-phosphate isomerase | HMPREF1534_00366 | Not Available | Negative | 445310 - 445744 | 16156.3 |
| hypothetical protein | HMPREF1534_00367 | Not Available | Negative | 445741 - 447753 | 72878.0 |
| hypothetical protein | HMPREF1534_00368 | Not Available | Negative | 447889 - 449451 | 59521.7 |
| hypothetical protein | HMPREF1534_00369 | Not Available | Positive | 449512 - 450798 | 49043.0 |
| hypothetical protein | HMPREF1534_00370 | Not Available | Negative | 450961 - 451575 | 22808.6 |
| galactokinase | HMPREF1534_00371 | Not Available | Negative | 451681 - 452835 | 42944.0 |
| hypothetical protein | HMPREF1534_00372 | Not Available | Negative | 452877 - 454148 | 45173.1 |
| hypothetical protein | HMPREF1534_00373 | Not Available | Negative | 454189 - 455283 | 39952.7 |
| folc protein | HMPREF1534_00374 | Not Available | Negative | 455378 - 456664 | 48038.5 |
| chaperone dnaj | HMPREF1534_00375 | Not Available | Negative | 456819 - 457994 | 42314.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


