Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspt/yide/ybjl antiporter duplication domain-containing protein | HMPREF1534_00116 | Not Available | + | 136327 - 137997 | 59967.7 |
| hypothetical protein | HMPREF1534_00117 | Not Available | + | 138133 - 139770 | 61948.6 |
| dtdp-glucose 4,6-dehydratase | HMPREF1534_00118 | Not Available | - | 140190 - 141329 | 43614.8 |
| mj0936 family phosphodiesterase | HMPREF1534_00119 | Not Available | - | 141390 - 141881 | 18484.1 |
| polyphosphate kinase 1 | HMPREF1534_00120 | Not Available | + | 141939 - 144008 | 81202.1 |
| hypothetical protein | HMPREF1534_00121 | Not Available | - | 144169 - 144804 | 23816.5 |
| mate efflux family protein | HMPREF1534_00122 | Not Available | - | 144846 - 146213 | 49699.4 |
| hypothetical protein | HMPREF1534_00123 | Not Available | + | 146335 - 147708 | 50427.5 |
| exodeoxyribonuclease vii, large subunit | HMPREF1534_00124 | Not Available | + | 147708 - 149018 | 49694.6 |
| hypothetical protein | HMPREF1534_00125 | Not Available | + | 149031 - 149231 | 7734.26 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


