Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00976 | Not Available | Negative | 1142794 - 1143318 | 19758.8 |
| hypothetical protein | HMPREF1534_00977 | Not Available | Negative | 1143333 - 1144487 | 42610.8 |
| nucleotide sugar dehydrogenase | HMPREF1534_00978 | Not Available | Positive | 1144607 - 1145920 | 48066.4 |
| hypothetical protein | HMPREF1534_00979 | Not Available | Positive | 1145932 - 1146720 | 29830.6 |
| hypothetical protein | HMPREF1534_00980 | Not Available | Negative | 1146949 - 1148205 | 46974.7 |
| phosphoserine phosphatase serb | HMPREF1534_00981 | Not Available | Negative | 1148229 - 1149461 | 46111.1 |
| hypothetical protein | HMPREF1534_00982 | Not Available | Positive | 1149735 - 1150229 | 18390.1 |
| hypothetical protein | HMPREF1534_00983 | Not Available | Negative | 1150449 - 1150562 | 4281.34 |
| hypothetical protein | HMPREF1534_00984 | Not Available | Negative | 1150575 - 1151342 | 29795.2 |
| had hydrolase, family ia | HMPREF1534_00985 | Not Available | Positive | 1151464 - 1152087 | 23947.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


