Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspt/yide/ybjl antiporter duplication domain-containing protein | HMPREF1534_00966 | Not Available | Negative | 1133333 - 1135021 | 60825.8 |
| hypothetical protein | HMPREF1534_00967 | Not Available | Positive | 1135074 - 1135190 | 4583.92 |
| cobyrinic acid a,c-diamide synthase | HMPREF1534_00968 | Not Available | Positive | 1135187 - 1136515 | 49159.7 |
| cobyric acid synthase | HMPREF1534_00969 | Not Available | Positive | 1136512 - 1137999 | 55451.0 |
| threonine-phosphate decarboxylase | HMPREF1534_00970 | Not Available | Positive | 1137992 - 1139011 | 38670.5 |
| cobalamin biosynthesis protein cobd | HMPREF1534_00971 | Not Available | Positive | 1138993 - 1139940 | 35073.6 |
| alpha-ribazole phosphatase | HMPREF1534_00972 | Not Available | Negative | 1139961 - 1140488 | 19986.7 |
| cobalamin 5'-phosphate synthase | HMPREF1534_00973 | Not Available | Negative | 1140482 - 1141231 | 27961.7 |
| nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase | HMPREF1534_00974 | Not Available | Negative | 1141234 - 1142271 | 37592.7 |
| hypothetical protein | HMPREF1534_00975 | Not Available | Negative | 1142276 - 1142788 | 19519.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


