Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-phosphogluconate dehydrogenase (decarboxylating) | HMPREF1534_00956 | Not Available | Positive | 1118500 - 1119936 | 52794.7 |
| glucose-6-phosphate dehydrogenase | HMPREF1534_00957 | Not Available | Positive | 1119964 - 1121472 | 57949.3 |
| 6-phosphogluconolactonase | HMPREF1534_00958 | Not Available | Positive | 1121469 - 1122170 | 26268.6 |
| hypothetical protein | HMPREF1534_00959 | Not Available | Negative | 1122335 - 1123486 | 43984.2 |
| cytochrome c-type biogenesis protein ccsb | HMPREF1534_00960 | Not Available | Negative | 1123555 - 1125828 | 86831.8 |
| hypothetical protein | HMPREF1534_00961 | Not Available | Negative | 1125926 - 1127512 | 60233.2 |
| hypothetical protein | HMPREF1534_00962 | Not Available | Negative | 1127554 - 1128735 | 43233.7 |
| hypothetical protein | HMPREF1534_00963 | Not Available | Negative | 1128765 - 1130090 | 50047.7 |
| hypothetical protein | HMPREF1534_00964 | Not Available | Negative | 1130501 - 1131073 | 22585.1 |
| heavy metal translocating p-type atpase | HMPREF1534_00965 | Not Available | Positive | 1131301 - 1133181 | 68493.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


