Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00946 | Not Available | Negative | 1104256 - 1105134 | 34279.5 |
| hypothetical protein | HMPREF1534_00947 | Not Available | Negative | 1105134 - 1108781 | 144493.0 |
| hypothetical protein | HMPREF1534_00948 | Not Available | Negative | 1108765 - 1109346 | 23231.4 |
| hypothetical protein | HMPREF1534_00949 | Not Available | Negative | 1109350 - 1110573 | 48501.1 |
| hypothetical protein | HMPREF1534_00950 | Not Available | Positive | 1110765 - 1112216 | 55185.3 |
| hypothetical protein | HMPREF1534_00951 | Not Available | Negative | 1112309 - 1113262 | 34246.3 |
| anaerobic c4-dicarboxylate uptake (dcu) family transporter | HMPREF1534_00952 | Not Available | Positive | 1113465 - 1114763 | 45859.2 |
| l-asparaginase, type ii | HMPREF1534_00953 | Not Available | Positive | 1114799 - 1115857 | 37719.5 |
| hypothetical protein | HMPREF1534_00954 | Not Available | Positive | 1116093 - 1117247 | 44644.7 |
| hypothetical protein | HMPREF1534_00955 | Not Available | Negative | 1117255 - 1118418 | 41410.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


