Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00936 | Not Available | Positive | 1093186 - 1094802 | 62267.7 |
| hypothetical protein | HMPREF1534_00937 | Not Available | Positive | 1094780 - 1096093 | 51230.4 |
| 2-aminoethylphosphonate-pyruvate transaminase | HMPREF1534_00938 | Not Available | Negative | 1096759 - 1097850 | 40622.8 |
| phosphonoacetaldehyde hydrolase | HMPREF1534_00939 | Not Available | Negative | 1097855 - 1098619 | 28009.0 |
| hypothetical protein | HMPREF1534_00940 | Not Available | Negative | 1098622 - 1099980 | 50957.2 |
| hypothetical protein | HMPREF1534_00941 | Not Available | Positive | 1100223 - 1101101 | 33647.3 |
| hypothetical protein | HMPREF1534_00942 | Not Available | Negative | 1101115 - 1101981 | 33038.4 |
| hypothetical protein | HMPREF1534_00943 | Not Available | Negative | 1102202 - 1102552 | 13612.2 |
| hypothetical protein | HMPREF1534_00944 | Not Available | Positive | 1102681 - 1103508 | 31957.7 |
| hypothetical protein | HMPREF1534_00945 | Not Available | Positive | 1103573 - 1104223 | 24569.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


