Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00926 | Not Available | Positive | 1085579 - 1085827 | 8778.76 |
| hypothetical protein | HMPREF1534_00927 | Not Available | Positive | 1085847 - 1086272 | 17270.9 |
| atp synthase f0, a subunit | HMPREF1534_00928 | Not Available | Positive | 1086265 - 1087353 | 40325.1 |
| atp synthase subunit c | HMPREF1534_00929 | Not Available | Positive | 1087381 - 1087632 | 8076.39 |
| atp synthase subunit b | HMPREF1534_00930 | Not Available | Positive | 1087648 - 1088148 | 19003.2 |
| atp synthase subunit delta | HMPREF1534_00931 | Not Available | Positive | 1088155 - 1088709 | 20949.7 |
| atp synthase subunit alpha | HMPREF1534_00932 | Not Available | Positive | 1088728 - 1090317 | 57576.5 |
| atp synthase gamma chain | HMPREF1534_00933 | Not Available | Positive | 1090323 - 1091186 | 32292.4 |
| hypothetical protein | HMPREF1534_00934 | Not Available | Negative | 1091234 - 1091965 | 27636.3 |
| hypothetical protein | HMPREF1534_00935 | Not Available | Negative | 1091980 - 1093029 | 40240.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


