Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00876 | Not Available | Positive | 1031903 - 1032466 | 20172.4 |
| trna(ile)-lysidine synthetase | HMPREF1534_00877 | Not Available | Negative | 1032596 - 1033957 | 52297.3 |
| ferrous iron transporter b | HMPREF1534_00878 | Not Available | Positive | 1034074 - 1036545 | 92853.6 |
| Trna-cys | Not Available | Not Available | Positive | 1036859 - 1036933 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 1037541 - 1037616 | Not Available |
| hypothetical protein | HMPREF1534_00881 | Not Available | Positive | 1037754 - 1038137 | 14685.6 |
| hypothetical protein | HMPREF1534_00882 | Not Available | Negative | 1038730 - 1040433 | 63002.7 |
| rna methyltransferase, trmh family, group 3 | HMPREF1534_00883 | Not Available | Negative | 1040450 - 1041202 | 27707.8 |
| dna repair protein recn | HMPREF1534_00884 | Not Available | Negative | 1041208 - 1042872 | 62269.8 |
| phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase | HMPREF1534_00885 | Not Available | Negative | 1042882 - 1044069 | 43278.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


