Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00866 | Not Available | Positive | 1022101 - 1023090 | 37079.0 |
| hypothetical protein | HMPREF1534_00867 | Not Available | Positive | 1023411 - 1024151 | 27374.1 |
| iron-sulfur cluster-binding protein | HMPREF1534_00868 | Not Available | Positive | 1024148 - 1025503 | 50787.3 |
| hypothetical protein | HMPREF1534_00869 | Not Available | Positive | 1025510 - 1026097 | 21859.2 |
| hypothetical protein | HMPREF1534_00870 | Not Available | Negative | 1026195 - 1026953 | 27225.7 |
| pyruvate formate-lyase 1-activating enzyme | HMPREF1534_00871 | Not Available | Negative | 1027075 - 1027803 | 28007.7 |
| formate acetyltransferase | HMPREF1534_00872 | Not Available | Negative | 1027878 - 1030106 | 84031.2 |
| hypothetical protein | HMPREF1534_00873 | Not Available | Positive | 1030241 - 1030957 | 27781.7 |
| Trna-ser | Not Available | Not Available | Positive | 1031071 - 1031160 | Not Available |
| hypothetical protein | HMPREF1534_00875 | Not Available | Negative | 1031599 - 1031727 | 4884.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


