Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 30s ribosomal protein s16 | HMPREF1534_00846 | Not Available | Negative | 1001830 - 1002375 | 19637.2 |
| hypothetical protein | HMPREF1534_00847 | Not Available | Positive | 1002594 - 1003076 | 17968.3 |
| hypothetical protein | HMPREF1534_00848 | Not Available | Negative | 1003180 - 1004028 | 31473.4 |
| opt family oligopeptide transporter | HMPREF1534_00849 | Not Available | Negative | 1004143 - 1006131 | 70032.3 |
| hypothetical protein | HMPREF1534_00850 | Not Available | Negative | 1006217 - 1006981 | 30240.6 |
| hypothetical protein | HMPREF1534_00851 | Not Available | Negative | 1006950 - 1007759 | 31218.2 |
| hypothetical protein | HMPREF1534_00852 | Not Available | Negative | 1007924 - 1008328 | 14571.6 |
| hypothetical protein | HMPREF1534_00853 | Not Available | Negative | 1008421 - 1008774 | 12724.9 |
| rela/spot family protein | HMPREF1534_00854 | Not Available | Negative | 1008805 - 1011108 | 88090.0 |
| hypothetical protein | HMPREF1534_00855 | Not Available | Positive | 1011164 - 1012681 | 56771.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


