Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00836 | Not Available | Negative | 987324 - 987701 | 14453.1 |
| metal ion (mn2+/fe2+) transporter (nramp) family metal ion transporter | HMPREF1534_00837 | Not Available | Positive | 987804 - 989060 | 45875.2 |
| hypothetical protein | HMPREF1534_00838 | Not Available | Negative | 989074 - 990540 | 53653.6 |
| had hydrolase, family ia | HMPREF1534_00839 | Not Available | Positive | 990685 - 991335 | 24670.6 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | HMPREF1534_00840 | Not Available | Positive | 991388 - 992209 | 29665.0 |
| hypothetical protein | HMPREF1534_00841 | Not Available | Positive | 992224 - 993393 | 43575.5 |
| chvd family atp-binding cassette protein | HMPREF1534_00842 | Not Available | Positive | 993411 - 995099 | 63776.3 |
| hypothetical protein | HMPREF1534_00843 | Not Available | Positive | 995446 - 998148 | 98955.2 |
| hypothetical protein | HMPREF1534_00844 | Not Available | Positive | 998168 - 1000051 | 70647.5 |
| hypothetical protein | HMPREF1534_00845 | Not Available | Positive | 1000129 - 1001520 | 51998.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


