Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00826 | Not Available | Positive | 973704 - 975209 | 55285.3 |
| cytochrome d ubiquinol oxidase, subunit ii | HMPREF1534_00827 | Not Available | Positive | 975256 - 976401 | 42846.6 |
| hypothetical protein | HMPREF1534_00828 | Not Available | Positive | 976778 - 978814 | 77650.3 |
| hypothetical protein | HMPREF1534_00829 | Not Available | Negative | 978985 - 980637 | 62410.5 |
| hypothetical protein | HMPREF1534_00830 | Not Available | Negative | 980651 - 981226 | 21277.3 |
| riboflavin synthase, alpha subunit | HMPREF1534_00831 | Not Available | Positive | 981341 - 981946 | 22720.1 |
| yihy family inner membrane protein | HMPREF1534_00832 | Not Available | Negative | 981943 - 983262 | 50577.3 |
| peptidase do | HMPREF1534_00833 | Not Available | Positive | 983955 - 985478 | 54037.8 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_00834 | Not Available | Positive | 985760 - 986620 | 32720.2 |
| hypothetical protein | HMPREF1534_00835 | Not Available | Positive | 986794 - 987198 | 15445.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


