Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanyl-trna synthetase beta chain | HMPREF1534_00816 | Not Available | Positive | 962611 - 965073 | 91144.9 |
| yebc/pmpr family dna-binding regulatory protein | HMPREF1534_00817 | Not Available | Positive | 965108 - 965842 | 27630.6 |
| hypothetical protein | HMPREF1534_00818 | Not Available | Positive | 965845 - 966087 | 8896.81 |
| hypothetical protein | HMPREF1534_00819 | Not Available | Negative | 966743 - 967468 | 27911.9 |
| hypothetical protein | HMPREF1534_00820 | Not Available | Negative | 967465 - 968520 | 40706.8 |
| hypothetical protein | HMPREF1534_00821 | Not Available | Negative | 968669 - 969889 | 44003.9 |
| hypothetical protein | HMPREF1534_00822 | Not Available | Negative | 969932 - 970675 | 27262.9 |
| efflux transporter, rnd family, mfp subunit | HMPREF1534_00823 | Not Available | Negative | 970711 - 971928 | 43918.6 |
| tolc family type i secretion outer membrane protein | HMPREF1534_00824 | Not Available | Negative | 971965 - 973308 | 50196.2 |
| hypothetical protein | HMPREF1534_00825 | Not Available | Positive | 973464 - 973682 | 8765.03 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


