Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-1-phosphate thymidylyltransferase | HMPREF1534_00746 | Not Available | Negative | 887031 - 887915 | 32626.5 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | HMPREF1534_00747 | Not Available | Positive | 888053 - 889117 | 40534.4 |
| gdp-mannose 4,6-dehydratase | HMPREF1534_00748 | Not Available | Positive | 889166 - 890248 | 41360.8 |
| hypothetical protein | HMPREF1534_00749 | Not Available | Positive | 890248 - 891318 | 39978.1 |
| hypothetical protein | HMPREF1534_00750 | Not Available | Negative | 891469 - 891594 | 5066.46 |
| hypothetical protein | HMPREF1534_00751 | Not Available | Positive | 891657 - 892223 | 21389.2 |
| hypothetical protein | HMPREF1534_00752 | Not Available | Positive | 892357 - 893478 | 41981.0 |
| hypothetical protein | HMPREF1534_00753 | Not Available | Positive | 893483 - 893881 | 15357.3 |
| hypothetical protein | HMPREF1534_00754 | Not Available | Positive | 893878 - 894294 | 15827.7 |
| hypothetical protein | HMPREF1534_00755 | Not Available | Positive | 894294 - 894824 | 19247.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


