Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00736 | Not Available | Negative | 875124 - 875735 | 23404.7 |
| hypothetical protein | HMPREF1534_00737 | Not Available | Negative | 875760 - 876251 | 18653.6 |
| hypothetical protein | HMPREF1534_00738 | Not Available | Negative | 876248 - 877153 | 34174.1 |
| hypothetical protein | HMPREF1534_00739 | Not Available | Negative | 877134 - 878597 | 55141.0 |
| hypothetical protein | HMPREF1534_00740 | Not Available | Negative | 878598 - 880745 | 82490.8 |
| hypothetical protein | HMPREF1534_00741 | Not Available | Negative | 880747 - 881571 | 30824.9 |
| hypothetical protein | HMPREF1534_00742 | Not Available | Negative | 881611 - 882777 | 44560.1 |
| hypothetical protein | HMPREF1534_00743 | Not Available | Negative | 882781 - 883146 | 14238.7 |
| hypothetical protein | HMPREF1534_00744 | Not Available | Positive | 883600 - 886179 | 95156.0 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | HMPREF1534_00745 | Not Available | Negative | 886474 - 887031 | 21204.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


