Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00686 | Not Available | Negative | 816543 - 817400 | 32075.6 |
| hypothetical protein | HMPREF1534_00687 | Not Available | Positive | 817554 - 818906 | 51415.9 |
| hypothetical protein | HMPREF1534_00688 | Not Available | Positive | 818936 - 820975 | 79174.7 |
| hypothetical protein | HMPREF1534_00689 | Not Available | Positive | 821114 - 821356 | 9329.0 |
| Trna-thr | Not Available | Not Available | Positive | 821620 - 821692 | Not Available |
| hypothetical protein | HMPREF1534_00691 | Not Available | Positive | 822464 - 824347 | 71542.1 |
| carbamoyl-phosphate synthase, small subunit | HMPREF1534_00692 | Not Available | Positive | 824373 - 825449 | 40036.5 |
| carbamoyl-phosphate synthase, large subunit | HMPREF1534_00693 | Not Available | Positive | 825492 - 828719 | 119415.0 |
| pas domain s-box protein | HMPREF1534_00694 | Not Available | Positive | 828888 - 831233 | 90094.9 |
| hypothetical protein | HMPREF1534_00695 | Not Available | Negative | 831346 - 835218 | 144388.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


