Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00666 | Not Available | Negative | 797330 - 797527 | 6928.45 |
| hypothetical protein | HMPREF1534_00667 | Not Available | Positive | 797740 - 798240 | 17935.4 |
| hypothetical protein | HMPREF1534_00668 | Not Available | Positive | 798369 - 799328 | 35991.2 |
| yqgf family rnase h domain-containing protein | HMPREF1534_00669 | Not Available | Positive | 799391 - 799822 | 16288.1 |
| peptide deformylase | HMPREF1534_00670 | Not Available | Positive | 799830 - 800384 | 21032.6 |
| hypothetical protein | HMPREF1534_00671 | Not Available | Positive | 800386 - 802395 | 77343.2 |
| threonyl-trna synthetase | HMPREF1534_00672 | Not Available | Positive | 802476 - 804416 | 74122.0 |
| translation initiation factor if-3 | HMPREF1534_00673 | Not Available | Positive | 804533 - 805075 | 20655.1 |
| 50s ribosomal protein l35 | HMPREF1534_00674 | Not Available | Positive | 805183 - 805380 | 7339.25 |
| 50s ribosomal protein l20 | HMPREF1534_00675 | Not Available | Positive | 805489 - 805839 | 13139.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


