Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| a/g-specific adenine glycosylase | HMPREF1534_00636 | Not Available | Positive | 765039 - 766097 | 40540.8 |
| single-stranded dna-binding protein | HMPREF1534_00637 | Not Available | Positive | 766112 - 766549 | 16171.0 |
| gliding motility-associated protein glde | HMPREF1534_00638 | Not Available | Positive | 766587 - 767936 | 50893.5 |
| hypothetical protein | HMPREF1534_00639 | Not Available | Positive | 767942 - 768583 | 24947.2 |
| hypothetical protein | HMPREF1534_00640 | Not Available | Positive | 769039 - 769461 | 16656.0 |
| hypothetical protein | HMPREF1534_00641 | Not Available | Negative | 769478 - 771259 | 68332.1 |
| hypothetical protein | HMPREF1534_00642 | Not Available | Negative | 771277 - 771966 | 26149.8 |
| l-asparaginase, type i | HMPREF1534_00643 | Not Available | Negative | 772071 - 773120 | 38888.9 |
| tryptophan synthase alpha chain | HMPREF1534_00644 | Not Available | Negative | 773245 - 774024 | 28747.0 |
| hypothetical protein | HMPREF1534_00645 | Not Available | Negative | 774021 - 774638 | 22890.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


