Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00566 | Not Available | Negative | 701454 - 701885 | 15136.5 |
| hypothetical protein | HMPREF1534_00567 | Not Available | Negative | 701910 - 702839 | 34156.1 |
| hypothetical protein | HMPREF1534_00568 | Not Available | Negative | 702871 - 704424 | 56510.9 |
| methylmalonyl-coa epimerase | HMPREF1534_00569 | Not Available | Negative | 704495 - 704908 | 14924.0 |
| hypothetical protein | HMPREF1534_00570 | Not Available | Negative | 705075 - 706055 | 38825.3 |
| hypothetical protein | HMPREF1534_00571 | Not Available | Positive | 706141 - 706677 | 19975.2 |
| hypothetical protein | HMPREF1534_00572 | Not Available | Positive | 706680 - 707003 | 11801.2 |
| hypothetical protein | HMPREF1534_00573 | Not Available | Positive | 707000 - 707773 | 28683.9 |
| yrbi family 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | HMPREF1534_00574 | Not Available | Positive | 707776 - 708294 | 19083.1 |
| maf-like protein | HMPREF1534_00575 | Not Available | Positive | 708302 - 708883 | 21826.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


