Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00556 | Not Available | Negative | 689090 - 692011 | 111414.0 |
| valyl-trna synthetase | HMPREF1534_00557 | Not Available | Negative | 692161 - 694854 | 102892.0 |
| hypothetical protein | HMPREF1534_00558 | Not Available | Negative | 694999 - 695736 | 27565.3 |
| hypothetical protein | HMPREF1534_00559 | Not Available | Positive | 695825 - 696586 | 28885.8 |
| mazg family protein | HMPREF1534_00560 | Not Available | Positive | 696668 - 697453 | 30533.3 |
| hypothetical protein | HMPREF1534_00561 | Not Available | Negative | 697651 - 698082 | 16313.0 |
| hypothetical protein | HMPREF1534_00562 | Not Available | Positive | 698181 - 699002 | 30542.7 |
| hypothetical protein | HMPREF1534_00563 | Not Available | Positive | 699006 - 699764 | 27102.7 |
| hypothetical protein | HMPREF1534_00564 | Not Available | Negative | 699868 - 700116 | 9367.44 |
| sodium ion-translocating decarboxylase, beta subunit | HMPREF1534_00565 | Not Available | Negative | 700292 - 701452 | 40934.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


