Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00546 | Not Available | Negative | 677190 - 678464 | 47240.6 |
| type iii pantothenate kinase | HMPREF1534_00547 | Not Available | Negative | 678451 - 679179 | 26954.9 |
| hypothetical protein | HMPREF1534_00548 | Not Available | Positive | 679345 - 680514 | 44608.4 |
| hypothetical protein | HMPREF1534_00549 | Not Available | Positive | 680511 - 682094 | 59336.5 |
| protein translocase subunit seca | HMPREF1534_00550 | Not Available | Positive | 682190 - 685486 | 125152.0 |
| hypothetical protein | HMPREF1534_00551 | Not Available | Positive | 685611 - 686609 | 37408.7 |
| hypothetical protein | HMPREF1534_00552 | Not Available | Positive | 686681 - 687130 | 16923.8 |
| hypothetical protein | HMPREF1534_00553 | Not Available | Negative | 687377 - 687751 | 14642.0 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_00554 | Not Available | Negative | 687748 - 688296 | 21223.3 |
| hypothetical protein | HMPREF1534_00555 | Not Available | Positive | 688440 - 688844 | 14631.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


