Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00476 | Not Available | Negative | 590191 - 591183 | 37060.8 |
| hypothetical protein | HMPREF1534_00477 | Not Available | Positive | 591345 - 592019 | 24816.2 |
| trna pseudouridine synthase a | HMPREF1534_00478 | Not Available | Positive | 592060 - 592809 | 28788.3 |
| hypothetical protein | HMPREF1534_00479 | Not Available | Negative | 592818 - 593585 | 30724.0 |
| hypothetical protein | HMPREF1534_00480 | Not Available | Negative | 593582 - 594910 | 50882.5 |
| hypothetical protein | HMPREF1534_00481 | Not Available | Positive | 595001 - 595924 | 34811.0 |
| hypothetical protein | HMPREF1534_00482 | Not Available | Negative | 595931 - 597154 | 45611.7 |
| hypothetical protein | HMPREF1534_00483 | Not Available | Positive | 597312 - 598490 | 46010.0 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | HMPREF1534_00484 | Not Available | Positive | 598533 - 602078 | 129311.0 |
| hypothetical protein | HMPREF1534_00485 | Not Available | Positive | 602648 - 602902 | 9772.61 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


