Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_00466 | Not Available | Positive | 578932 - 580566 | 59464.2 |
| xanthine permease | HMPREF1534_00467 | Not Available | Negative | 580820 - 582151 | 46442.1 |
| xanthine phosphoribosyltransferase | HMPREF1534_00468 | Not Available | Negative | 582156 - 582722 | 20929.8 |
| hypothetical protein | HMPREF1534_00469 | Not Available | Negative | 582977 - 583600 | 23411.4 |
| hypothetical protein | HMPREF1534_00470 | Not Available | Negative | 583616 - 584968 | 50008.3 |
| chorismate synthase | HMPREF1534_00471 | Not Available | Negative | 585119 - 586195 | 39159.8 |
| hypothetical protein | HMPREF1534_00472 | Not Available | Negative | 586540 - 587484 | 35963.6 |
| shikimate 5-dehydrogenase | HMPREF1534_00473 | Not Available | Negative | 587488 - 588231 | 27680.6 |
| menaquinone biosynthesis methyltransferase ubie | HMPREF1534_00474 | Not Available | Negative | 588249 - 588989 | 28090.9 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | HMPREF1534_00475 | Not Available | Negative | 589205 - 590149 | 35921.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


