Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03883 | Not Available | + | 4429657 - 4431420 | 67162.6 |
| hypothetical protein | HMPREF1534_03884 | Not Available | + | 4431717 - 4433603 | 70847.2 |
| dna protecting protein dpra | HMPREF1534_03885 | Not Available | - | 4433682 - 4434797 | 40908.5 |
| ybgc/ybaw family acyl-coa thioester hydrolase | HMPREF1534_03886 | Not Available | - | 4434794 - 4435204 | 15740.0 |
| hypothetical protein | HMPREF1534_03887 | Not Available | + | 4435258 - 4436199 | 36519.8 |
| lactaldehyde reductase | HMPREF1534_03888 | Not Available | + | 4436272 - 4437426 | 40829.6 |
| hypothetical protein | HMPREF1534_03889 | Not Available | - | 4437567 - 4438832 | 48840.3 |
| dihydrodipicolinate reductase | HMPREF1534_03890 | Not Available | + | 4438916 - 4439671 | 27384.4 |
| signal peptidase i | HMPREF1534_03891 | Not Available | + | 4439675 - 4441099 | 54741.0 |
| signal peptidase i | HMPREF1534_03892 | Not Available | + | 4441135 - 4441998 | 32936.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


