Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| c-terminal processing peptidase | HMPREF1534_03873 | Not Available | + | 4414722 - 4416332 | 61123.1 |
| hypothetical protein | HMPREF1534_03874 | Not Available | - | 4416605 - 4417162 | 19887.2 |
| b558 family succinate dehydrogenase (or fumarate reductase) cytochrome b subunit | HMPREF1534_03875 | Not Available | + | 4417397 - 4418083 | 25456.4 |
| succinate dehydrogenase or fumarate reductase, flavoprotein subunit | HMPREF1534_03876 | Not Available | + | 4418118 - 4420076 | 72679.5 |
| succinate dehydrogenase and fumarate reductase iron-sulfur protein | HMPREF1534_03877 | Not Available | + | 4420097 - 4420852 | 27308.1 |
| hypothetical protein | HMPREF1534_03878 | Not Available | - | 4420909 - 4421772 | 33632.8 |
| hypothetical protein | HMPREF1534_03879 | Not Available | - | 4422161 - 4423168 | 36642.4 |
| hypothetical protein | HMPREF1534_03880 | Not Available | - | 4423211 - 4424209 | 36492.4 |
| hypothetical protein | HMPREF1534_03881 | Not Available | - | 4424176 - 4424805 | 23893.7 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03882 | Not Available | + | 4426438 - 4429629 | 117459.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


