Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | HMPREF1534_03813 | Not Available | + | 4339422 - 4339880 | 17074.7 |
| hypothetical protein | HMPREF1534_03814 | Not Available | - | 4339910 - 4341052 | 43750.8 |
| hypothetical protein | HMPREF1534_03815 | Not Available | - | 4341068 - 4342897 | 69057.3 |
| drug:h+ antiporter-2 (14 spanner) (dha2) family drug resistance mfs transporter | HMPREF1534_03816 | Not Available | - | 4343118 - 4344497 | 49329.9 |
| s-adenosylmethionine synthase | HMPREF1534_03817 | Not Available | + | 4344775 - 4346067 | 47660.9 |
| tigr00730 family protein | HMPREF1534_03818 | Not Available | + | 4346137 - 4346724 | 21567.3 |
| hypothetical protein | HMPREF1534_03819 | Not Available | + | 4346721 - 4347533 | 31549.2 |
| hypothetical protein | HMPREF1534_03820 | Not Available | + | 4347538 - 4348287 | 28518.4 |
| ribonuclease p protein component | HMPREF1534_03821 | Not Available | + | 4348388 - 4348777 | 14981.7 |
| upf0161 protein | HMPREF1534_03822 | Not Available | + | 4348774 - 4348995 | 8371.51 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.


