Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03753 | Not Available | Negative | 4274367 - 4274789 | 16547.4 |
| l-aspartate oxidase | HMPREF1534_03754 | Not Available | Positive | 4275052 - 4276632 | 59005.5 |
| hypothetical protein | HMPREF1534_03755 | Not Available | Positive | 4276637 - 4279000 | 89394.0 |
| hypothetical protein | HMPREF1534_03756 | Not Available | Negative | 4279209 - 4280330 | 43354.7 |
| hypothetical protein | HMPREF1534_03757 | Not Available | Negative | 4280336 - 4281244 | 34372.4 |
| hypothetical protein | HMPREF1534_03758 | Not Available | Negative | 4281262 - 4283058 | 68572.4 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03759 | Not Available | Negative | 4283087 - 4286362 | 123054.0 |
| hypothetical protein | HMPREF1534_03760 | Not Available | Negative | 4286629 - 4287207 | 21658.5 |
| sulfate permease | HMPREF1534_03761 | Not Available | Positive | 4287561 - 4289243 | 60510.5 |
| hypothetical protein | HMPREF1534_03762 | Not Available | Negative | 4289502 - 4289702 | 7412.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


