Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03743 | Not Available | Negative | 4263964 - 4264377 | 16193.2 |
| hypothetical protein | HMPREF1534_03744 | Not Available | Positive | 4265652 - 4265876 | 8202.01 |
| hypothetical protein | HMPREF1534_03745 | Not Available | Positive | 4266208 - 4266753 | 20840.1 |
| hypothetical protein | HMPREF1534_03746 | Not Available | Positive | 4267003 - 4267140 | 5126.41 |
| hypothetical protein | HMPREF1534_03747 | Not Available | Positive | 4267166 - 4269478 | 87399.2 |
| hypothetical protein | HMPREF1534_03748 | Not Available | Positive | 4269517 - 4270023 | 19671.4 |
| signal peptidase i | HMPREF1534_03749 | Not Available | Positive | 4270032 - 4270913 | 34117.2 |
| hypothetical protein | HMPREF1534_03750 | Not Available | Positive | 4270918 - 4272414 | 58154.3 |
| dihydrolipoyl dehydrogenase | HMPREF1534_03751 | Not Available | Negative | 4272534 - 4273874 | 47660.9 |
| hypothetical protein | HMPREF1534_03752 | Not Available | Negative | 4273893 - 4274297 | 15393.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


