Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03703 | Not Available | Negative | 4206840 - 4208072 | 46102.6 |
| trna dihydrouridine synthase a | HMPREF1534_03704 | Not Available | Positive | 4208174 - 4209157 | 36807.1 |
| hypothetical protein | HMPREF1534_03705 | Not Available | Negative | 4209154 - 4210095 | 33010.8 |
| hypothetical protein | HMPREF1534_03706 | Not Available | Negative | 4210395 - 4211372 | 37668.4 |
| hypothetical protein | HMPREF1534_03707 | Not Available | Negative | 4211363 - 4212373 | 38814.9 |
| cation diffusion facilitator family transporter | HMPREF1534_03708 | Not Available | Negative | 4212390 - 4213331 | 34456.4 |
| ribonuclease r | HMPREF1534_03709 | Not Available | Positive | 4213423 - 4215570 | 81881.4 |
| hypothetical protein | HMPREF1534_03710 | Not Available | Negative | 4215780 - 4215908 | 4690.81 |
| serine o-acetyltransferase | HMPREF1534_03711 | Not Available | Positive | 4216019 - 4216939 | 33288.7 |
| hypothetical protein | HMPREF1534_03712 | Not Available | Negative | 4216936 - 4218933 | 77330.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


