Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03693 | Not Available | Negative | 4194976 - 4196034 | 39983.6 |
| hypothetical protein | HMPREF1534_03694 | Not Available | Negative | 4196039 - 4196668 | 24254.3 |
| hypothetical protein | HMPREF1534_03695 | Not Available | Negative | 4196665 - 4197396 | 27989.8 |
| hypothetical protein | HMPREF1534_03696 | Not Available | Negative | 4197393 - 4199033 | 62668.1 |
| hypothetical protein | HMPREF1534_03697 | Not Available | Negative | 4199130 - 4200239 | 43691.9 |
| tdp-4-keto-6-deoxy-d-glucose transaminase | HMPREF1534_03698 | Not Available | Negative | 4200214 - 4201371 | 43520.8 |
| hypothetical protein | HMPREF1534_03699 | Not Available | Positive | 4201505 - 4202332 | 31931.1 |
| hypothetical protein | HMPREF1534_03700 | Not Available | Negative | 4202409 - 4204232 | 68085.3 |
| hypothetical protein | HMPREF1534_03701 | Not Available | Negative | 4204257 - 4204883 | 23909.5 |
| arginyl-trna synthetase | HMPREF1534_03702 | Not Available | Negative | 4204917 - 4206737 | 68163.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


