Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03673 | Not Available | Negative | 4171933 - 4173072 | 42709.6 |
| hypothetical protein | HMPREF1534_03674 | Not Available | Negative | 4173176 - 4174669 | 56131.7 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1534_03675 | Not Available | Negative | 4174694 - 4178095 | 124499.0 |
| hypothetical protein | HMPREF1534_03676 | Not Available | Negative | 4178348 - 4179373 | 39639.3 |
| rna polymerase sigma-70 factor | HMPREF1534_03677 | Not Available | Positive | 4179520 - 4180101 | 22923.0 |
| hypothetical protein | HMPREF1534_03678 | Not Available | Positive | 4180980 - 4181468 | 19512.6 |
| hypothetical protein | HMPREF1534_03679 | Not Available | Positive | 4181521 - 4184136 | 95472.3 |
| hypothetical protein | HMPREF1534_03680 | Not Available | Negative | 4184239 - 4184694 | 18145.7 |
| hypothetical protein | HMPREF1534_03681 | Not Available | Negative | 4184826 - 4185842 | 37794.5 |
| hypothetical protein | HMPREF1534_03682 | Not Available | Positive | 4185957 - 4186562 | 23712.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


