Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03663 | Not Available | Positive | 4154734 - 4156287 | 58260.0 |
| ribonuclease 3 | HMPREF1534_03664 | Not Available | Negative | 4156388 - 4157302 | 34947.0 |
| beta-ketoacyl-acyl-carrier-protein synthase ii | HMPREF1534_03665 | Not Available | Negative | 4157305 - 4158570 | 44550.7 |
| acyl carrier protein | HMPREF1534_03666 | Not Available | Negative | 4158589 - 4158825 | 8423.8 |
| phosphoribosylglycinamide formyltransferase | HMPREF1534_03667 | Not Available | Positive | 4158978 - 4159538 | 20664.9 |
| hypothetical protein | HMPREF1534_03668 | Not Available | Negative | 4159740 - 4162019 | 86336.2 |
| hypothetical protein | HMPREF1534_03669 | Not Available | Negative | 4162543 - 4164696 | 82398.3 |
| hypothetical protein | HMPREF1534_03670 | Not Available | Negative | 4164730 - 4167882 | 119678.0 |
| hypothetical protein | HMPREF1534_03671 | Not Available | Negative | 4167896 - 4170280 | 90740.9 |
| hypothetical protein | HMPREF1534_03672 | Not Available | Negative | 4170294 - 4171871 | 59052.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


