Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1534_03613 | Not Available | Negative | 4102605 - 4104851 | 82295.9 |
| 6-phosphofructokinase 1 | HMPREF1534_03614 | Not Available | Negative | 4104865 - 4105848 | 35513.5 |
| sigma-70 family rna polymerase sigma factor | HMPREF1534_03615 | Not Available | Negative | 4105914 - 4106369 | 17822.3 |
| hypothetical protein | HMPREF1534_03616 | Not Available | Negative | 4106455 - 4106883 | 16428.6 |
| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase 1 | HMPREF1534_03617 | Not Available | Negative | 4106951 - 4107700 | 28421.1 |
| hypothetical protein | HMPREF1534_03618 | Not Available | Negative | 4107714 - 4108763 | 38096.7 |
| hypothetical protein | HMPREF1534_03619 | Not Available | Negative | 4108792 - 4109274 | 18275.6 |
| marc family membrane protein | HMPREF1534_03620 | Not Available | Negative | 4109325 - 4109972 | 23915.4 |
| hypothetical protein | HMPREF1534_03621 | Not Available | Negative | 4110075 - 4110503 | 16837.2 |
| hypothetical protein | HMPREF1534_03622 | Not Available | Positive | 4112278 - 4112400 | 4621.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


