Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola massiliensis |
| Strain | B84634 = Timone 84634 = DSM 17679 = JCM |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1304608 bp
Thymine Count
1311189 bp
Guanine Count
968725 bp
Cytosine Count
980062 bp
Genome Length
4564584 bp
Protein-coding Genes
3935 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | HMPREF1534_03583 | Not Available | Negative | 4079434 - 4080477 | 39393.2 |
| Trna-leu | Not Available | Not Available | Positive | 4080662 - 4080748 | Not Available |
| hypothetical protein | HMPREF1534_03585 | Not Available | Positive | 4080982 - 4081890 | 35235.3 |
| excisionase family dna binding domain-containing protein | HMPREF1534_03586 | Not Available | Positive | 4082015 - 4082302 | 11251.8 |
| hypothetical protein | HMPREF1534_03587 | Not Available | Positive | 4082308 - 4083381 | 40776.8 |
| hypothetical protein | HMPREF1534_03588 | Not Available | Positive | 4083545 - 4084510 | 37077.1 |
| hypothetical protein | HMPREF1534_03589 | Not Available | Positive | 4084658 - 4085041 | 14302.4 |
| hypothetical protein | HMPREF1534_03590 | Not Available | Positive | 4085007 - 4085927 | 34760.9 |
| hypothetical protein | HMPREF1534_03591 | Not Available | Positive | 4085932 - 4086651 | 27750.6 |
| hypothetical protein | HMPREF1534_03592 | Not Available | Negative | 4086704 - 4087036 | 13091.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


